FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index16_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 18983132 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| GAAGA | 4041660 | 2.5432086 | 5.1459446 | 2 |
| CTTCT | 4115515 | 2.5325112 | 5.500462 | 1 |
| AAGAA | 4090900 | 2.531426 | 5.165812 | 2 |
| CCAGG | 3916950 | 2.5242867 | 5.0723014 | 1 |
| CCTGG | 3932210 | 2.5234232 | 5.857625 | 1 |
| CTGGA | 3793675 | 2.4056323 | 8.482954 | 1 |
| TCCAG | 3687265 | 2.3269224 | 5.217822 | 2 |
| CTCCT | 3650510 | 2.2829812 | 7.011564 | 1 |
| CTGGG | 3472775 | 2.239348 | 8.065467 | 1 |
| CAGGA | 3454105 | 2.1995912 | 5.371905 | 1 |
| CTTCA | 3550390 | 2.19402 | 5.643893 | 1 |
| CTCCA | 3436645 | 2.1583445 | 7.342808 | 1 |
| CCCAG | 3345500 | 2.1456566 | 6.853945 | 1 |
| CAGAA | 3337080 | 2.0897644 | 5.145829 | 1 |
| CTCTG | 3209735 | 2.0170166 | 6.263551 | 1 |
| CTGGC | 2916870 | 1.8718476 | 5.1089673 | 1 |
| TGGAA | 2944195 | 1.844809 | 5.1468506 | 2 |
| CTGAA | 2950390 | 1.8398091 | 5.530174 | 1 |
| CTCAG | 2740640 | 1.7295358 | 6.0654593 | 1 |
| CTTTG | 2755270 | 1.7036597 | 5.110244 | 1 |
| CTTGG | 2591675 | 1.636486 | 5.265142 | 1 |